C. elegans Metabolic Network (Netzschleuder)

Undirected metabolic network of C. elegans. Nodes are metabolites/enzymes. Multiple edges and self-loops present. Heterogeneous with named vertices and structural attributes.

npx keepset fetch netzschleuder-celegans-metabolic

Nodes: 453
Edges: 4,596
Size: 17.4 KiB

Fetch and preview this dataset on this page, or download the result as JSON. The command line fetches it without a browser.

Overview

Id	`netzschleuder-celegans-metabolic`
Namespace	`netzschleuder`
Aliases	`celegans-metabolic`
Category	`graph/v1`
Kind	graph
Domain	Biological network
Tags	unweighted
Licence	not recorded by the source
Catalogue	`keepset` 1.33.0

Sources and provenance

#	URL	Status	Retrieved	Read by recipe	Pinned snapshot	SHA-256
0	https://networks.skewed.de/net/celegans_metabolic	live	2026-04-20		20260420154621raw	`4ffdd7756267`
1	https://networks.skewed.de/net/celegans_metabolic/files/celegans_metabolic.csv.zip	live	2026-04-20	yes	20261022013226raw	`cb4759795411`

Citations

Duch, J., Arenas, A. (2005). Community detection in complex networks using extremal optimization. Physical Review E 72.

Recipe

Source	#1
Archive	zip
Member	`edges.csv`
Parser format	`"edge-list"`
Parser encoding	`"utf-8"`
Parser delimiter	`"comma"`
Parser skipLines	`0`
Parser commentPrefixes	`["#"]`
Parser sourceColumn	`0`
Parser targetColumn	`1`

Crosswalk

keepset/topology to graph/v1, as a crossmap crosswalk.

Rule	From	To	Direction
move	`meta`	`meta`	both
move	`nodes[].id`	`nodes[].id`	both
move	`edges[].source`	`edges[].source`	both
move	`edges[].target`	`edges[].target`	both

Expected counts

Edges	4,596
Nodes	453

Properties

Directed	no
Download bytes	17.4 KiB
Heterogeneous	yes
Multigraph	yes
Raw bytes	0 B
Self loops	yes
Weighted	no