Yeast Protein Interactions
Protein-protein interaction network in yeast (Saccharomyces cerevisiae).
npx keepset fetch yeast
- Nodes
- 2,361
- Edges
- 7,182
- Size
- 133.2 KiB
Fetch and preview this dataset on this page, or download the result as JSON. The command line fetches it without a browser.
Overview
Sources and provenance
Citations
- H. Jeong, S. P. Mason, A.-L. Barabási, Z. N. Oltvai (2001). Lethality and centrality in protein networks. Nature.
Recipe
| Source | #0 |
|---|
| Archive | zip |
|---|
| Member | ending .net or .paj |
|---|
| Parser format | "pajek" |
|---|
| Parser encoding | "latin1" |
|---|
Crosswalk
keepset/topology to graph/v1, as a crossmap crosswalk.
| Rule | From | To | Direction |
|---|
| move | meta | meta | both |
| move | nodes[].id | nodes[].id | both |
| move | edges[].source | edges[].source | both |
| move | edges[].target | edges[].target | both |
Expected counts
Properties
| Components | 101 |
|---|
| Connected | no |
|---|
| Cyclic | yes |
|---|
| Density | 0.002482 |
|---|
| Directed | no |
|---|
| Download bytes | 133.2 KiB |
|---|
| Edge types | 1 |
|---|
| Heterogeneous | yes |
|---|
| Multigraph | no |
|---|
| Node types | 1 |
|---|
| Raw bytes | 451.8 KiB |
|---|
| Self loops | yes |
|---|
| Weighted | no |
|---|