Yeast transcription network (2002)

Network of operons and their pairwise interactions, via transcription factor-based regulation, within the yeast Saccharomyces cerevisiae[^icon] [^icon]: Description obtained from the [ICON](https://icon.colorado.edu) project.

npx keepset fetch netzschleuder-yeast_transcription

Nodes: 916
Edges: 1,094
Size: 20.9 KiB

Fetch and preview this dataset on this page, or download the result as JSON. The command line fetches it without a browser.

Overview

Id	`netzschleuder-yeast_transcription`
Namespace	`netzschleuder`
Aliases	`yeast_transcription`
Category	`graph/v1`
Kind	graph
Domain	Biological network
Licence	not recorded by the source
Catalogue	`keepset` 1.33.0

Sources and provenance

#	URL	Status	Retrieved	Read by recipe	Pinned snapshot	SHA-256
0	http://www.weizmann.ac.il/mcb/UriAlon/download/collection-complex-networks	live	2026-04-20		20240716172441raw	`22f2cb123d96`
1	https://networks.skewed.de/net/yeast_transcription	live	2026-04-20		20260606104702raw	`bc9e6cb23135`
2	https://networks.skewed.de/net/yeast_transcription/files/yeast_transcription.csv.zip	live	2026-04-20	yes	20261022024652raw	`35f6e785abc3`

Citations

R. Milo et al., "Network Motifs: Simple Building Blocks of Complex Networks." Science 298, 824-827 (2002). doi:10.1126/science.298.5594.824

Recipe

Source	#2
Archive	zip
Member	`edges.csv`
Parser format	`"edge-list"`
Parser encoding	`"utf-8"`
Parser delimiter	`"comma"`
Parser skipLines	`0`
Parser commentPrefixes	`["#"]`
Parser sourceColumn	`0`
Parser targetColumn	`1`

Crosswalk

keepset/topology to graph/v1, as a crossmap crosswalk.

Rule	From	To	Direction
move	`meta`	`meta`	both
move	`nodes[].id`	`nodes[].id`	both
move	`edges[].source`	`edges[].source`	both
move	`edges[].target`	`edges[].target`	both

Expected counts

Edges	1,094
Nodes	916

Properties

Directed	yes
Download bytes	20.9 KiB
Heterogeneous	no
Multigraph	no
Self loops	yes
Weighted	no