PDZ-domain Interactome

Network of PDZ-domain-mediated protein-protein binding interactions from PDZBase. Nodes are proteins, edges are binding interactions. Simple undirected graph with self-loops.

npx keepset fetch netzschleuder-interactome-pdz

Nodes: 212
Edges: 244
Size: 5.3 KiB

Fetch and preview this dataset on this page, or download the result as JSON. The command line fetches it without a browser.

Overview

Id	`netzschleuder-interactome-pdz`
Namespace	`netzschleuder`
Aliases	`interactome-pdz`
Category	`graph/v1`
Kind	graph
Domain	Biological network
Tags	unweighted
Licence	not recorded by the source
Catalogue	`keepset` 1.33.0

Sources and provenance

#	URL	Status	Retrieved	Read by recipe	Pinned snapshot	SHA-256
0	https://networks.skewed.de/net/interactome_pdz	live	2026-04-20		20260606101353raw	`e33832c48d34`
1	https://networks.skewed.de/net/interactome_pdz/files/interactome_pdz.csv.zip	live	2026-04-20	yes	20261022023009raw	`f02a82726754`

Citations

Beuming, T., Skrabanek, L., Niv, M.Y., Mukherjee, P., Weinstein, H. (2004). PDZBase: a protein-protein interaction database for PDZ-domains. Bioinformatics 21(6), 827-828.

Recipe

Source	#1
Archive	zip
Member	`edges.csv`
Parser format	`"edge-list"`
Parser encoding	`"utf-8"`
Parser delimiter	`"comma"`
Parser skipLines	`0`
Parser commentPrefixes	`["#"]`
Parser sourceColumn	`0`
Parser targetColumn	`1`

Crosswalk

keepset/topology to graph/v1, as a crossmap crosswalk.

Rule	From	To	Direction
move	`meta`	`meta`	both
move	`nodes[].id`	`nodes[].id`	both
move	`edges[].source`	`edges[].source`	both
move	`edges[].target`	`edges[].target`	both

Expected counts

Edges	244
Nodes	212

Properties

Directed	no
Download bytes	5.3 KiB
Heterogeneous	no
Multigraph	no
Raw bytes	0 B
Self loops	yes
Weighted	no