Heterogeneous biomedical knowledge graph integrating 29 public databases. Contains 11 node types (Compounds, Diseases, Genes, Proteins, etc.) connected by 24 edge types including compound-disease treatments, gene-disease associations, and protein interactions. Designed for drug repurposing and biomedical discovery.
npx keepset fetch hetionet
Nodes
45,158
Edges
2,250,197
Size
11.8 MiB
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Daniel S. Himmelstein, Antoine Lizee, Christopher Hessler, Lev Braverman, Duncan Briscoe, Stephen A. Ramsey, Casey S. Greene (2017). Systematic Integration of Biomedical Knowledge Prioritizes Drugs for Repurposing. bioRxiv.
Recipe
Source
#0
Archive
gzip
Parser format
"kg-triples"
Parser encoding
"utf-8"
Parser delimiter
"tab"
Parser order
"head-relation-tail"
Parser header
"names"
Parser quoted
false
Crosswalk
keepset/relations to graph/v1, as a crossmap crosswalk.