Ciona intestinalis Gene Regulatory Network
Gene regulatory network for Ciona intestinalis (sea squirt). Nodes are genes and directed weighted edges represent regulatory interactions. Node 'group' property encodes gene functional categories, making this heterogeneous. Weights represent interaction strength (depth).
npx keepset fetch cintestinalis
- Nodes
- 205
- Edges
- 2,903
- Size
- 14.2 KiB
Fetch and preview this dataset on this page, or download the result as JSON. The command line fetches it without a browser.
Overview
| Id | cintestinalis |
|---|
| Category | graph/v1 |
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| Kind | graph |
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| Domain | Biological network |
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| Tags | heterogeneous |
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| Licence | not recorded by the source |
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| Catalogue | keepset 1.33.0 |
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Sources and provenance
Citations
- Netzschleuder (2020). cintestinalis gene regulatory network.
Recipe
| Source | #1 |
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| Archive | zip |
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| Member | edges.csv |
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| Parser format | "edge-list" |
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| Parser encoding | "utf-8" |
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| Parser delimiter | "comma" |
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| Parser skipLines | 0 |
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| Parser commentPrefixes | ["#"] |
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| Parser sourceColumn | 0 |
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| Parser targetColumn | 1 |
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Crosswalk
keepset/topology to graph/v1, as a crossmap crosswalk.
| Rule | From | To | Direction |
|---|
| move | meta | meta | both |
| move | nodes[].id | nodes[].id | both |
| move | edges[].source | edges[].source | both |
| move | edges[].target | edges[].target | both |
Expected counts
Properties
| Directed | yes |
|---|
| Download bytes | 14.2 KiB |
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| Heterogeneous | yes |
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| Multigraph | no |
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| Self loops | yes |
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| Weighted | no |
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