Bovine Genetic Interactome (Bos taurus)
Multiplex genetic interaction network for Bos taurus (cattle). Nodes are genes and directed edges represent genetic interactions across multiple interaction layers. Heterogeneous via layer attribute (different interaction types).
npx keepset fetch bos_genetic
- Nodes
- 325
- Edges
- 322
- Size
- 8.6 KiB
Fetch and preview this dataset on this page, or download the result as JSON. The command line fetches it without a browser.
Overview
| Id | bos_genetic |
|---|
| Category | graph/v1 |
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| Kind | graph |
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| Domain | Biological network |
|---|
| Tags | heterogeneous |
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| Licence | not recorded by the source |
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| Catalogue | keepset 1.33.0 |
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Sources and provenance
Citations
- Netzschleuder (2020). genetic_multiplex - Bos_Multiplex_Genetic sub-network.
Recipe
| Source | #1 |
|---|
| Archive | zip |
|---|
| Member | edges.csv |
|---|
| Parser format | "edge-list" |
|---|
| Parser encoding | "utf-8" |
|---|
| Parser delimiter | "comma" |
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| Parser skipLines | 0 |
|---|
| Parser commentPrefixes | ["#"] |
|---|
| Parser sourceColumn | 0 |
|---|
| Parser targetColumn | 1 |
|---|
Crosswalk
keepset/topology to graph/v1, as a crossmap crosswalk.
| Rule | From | To | Direction |
|---|
| move | meta | meta | both |
| move | nodes[].id | nodes[].id | both |
| move | edges[].source | edges[].source | both |
| move | edges[].target | edges[].target | both |
Expected counts
Properties
| Directed | yes |
|---|
| Download bytes | 8.6 KiB |
|---|
| Heterogeneous | yes |
|---|
| Multigraph | yes |
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| Self loops | yes |
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| Weighted | no |
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